PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G05400.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25993.6 Da    PI: 7.464
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G05400.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41e-29959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
  ONIVA06G05400.1  9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 59
                     79***********************************************96 PP
2K-box91.41.6e-308717512100
            K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +++ s +qe+ kLk ++e Lq++qR+llGedL +LslkeL+qLe+q+e sl +iRs Kn+ ll+q+ el++ke++lq++nk+L++k++e
  ONIVA06G05400.1  87 ETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQE 175
                      44567899*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS  60
SCMYKTLERY RSCNYNLNSC EASAALETEL SNYQEYLKLK TRVEFLQTTQ RNLLGEDLVP  120
LSLKELEQLE NQIEISLMNI RSSKNQQLLD QVFELKRKEQ QLQDANKDLK RKIQETSGEN  180
MLHISCQDVG PSGHASEANQ EFLHHAICDP SLHIGYQAYM DHLNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.26e-76MIKC_MADS family protein