PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G05610.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 697aa MW: 78240.9 Da PI: 9.309

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G05610.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.2e-22	214	300	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la ONIVA06G05610.1 214 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPTHNHQLA 300 7******************9***************99988..9999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MIRVNPQPST NVAGGLDFEI GRGARPIWAG FHWAECIEGP PVRRVHVRVS KTRCTQPRSG 60 APPDLPWTGS IVSAVDRRQP SPPHVAGLRR GRRSVVGKRR ASSVPRLPPP LTPSSSWLGP 120 DLRWGSAATA PRLAPPPPPA SPPRRYSGLR HLPLRALLRE MDSSRDSEEE RPQRKDNGEE 180 TENGEDGGNA LSLKDVANEL LGCVVHSEEE AYKLYCDYGH RIGFSVRKGK QSYFIGTKNI 240 RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV DEKGRWTVIR FVPTHNHQLA 300 KPGERHMLRS AKSLAVGKSG VIDPQASTES HPINGFSHMI GSDIVEPPGY TIRDCYNHVS 360 MQGITIIEAG DSQSLVNYFK RRTNEEGMFY WDVQVDQEGR MTNFFFRDAK SRNDFDCFGD 420 ACMQGPNSET ELEESWATML NEYKLQENSW LSDLYRSRNK WCSAFNKDTF DGGINSSQWG 480 EVSNNTFTGI SDESTPLTRF ALLLEKVFKG LRRNESEEDF RCSQTAPVRA IKHSTVLKQA 540 AESYTHKIYK LFEAEFLDGC GATSCHEREK ALDVFFEIRS LRSQAAKDVS KRDKKKKKSS 600 KGPSTKKAKP TPATSSAVPE LLAQTNVHQF QSAQDAQGNT TIGRPLYYQA FSSAPMQPNQ 660 IYMHPNMHTM PLCAPQQDFS AYSAMRPNSN FGGAKNV

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MIRVNPQPST NVAGGLDFEI GRGARPIWAG FHWAECIEGP PVRRVHVRVS KTRCTQPRSG  60
APPDLPWTGS IVSAVDRRQP SPPHVAGLRR GRRSVVGKRR ASSVPRLPPP LTPSSSWLGP  120
DLRWGSAATA PRLAPPPPPA SPPRRYSGLR HLPLRALLRE MDSSRDSEEE RPQRKDNGEE  180
TENGEDGGNA LSLKDVANEL LGCVVHSEEE AYKLYCDYGH RIGFSVRKGK QSYFIGTKNI  240
RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV DEKGRWTVIR FVPTHNHQLA  300
KPGERHMLRS AKSLAVGKSG VIDPQASTES HPINGFSHMI GSDIVEPPGY TIRDCYNHVS  360
MQGITIIEAG DSQSLVNYFK RRTNEEGMFY WDVQVDQEGR MTNFFFRDAK SRNDFDCFGD  420
ACMQGPNSET ELEESWATML NEYKLQENSW LSDLYRSRNK WCSAFNKDTF DGGINSSQWG  480
EVSNNTFTGI SDESTPLTRF ALLLEKVFKG LRRNESEEDF RCSQTAPVRA IKHSTVLKQA  540
AESYTHKIYK LFEAEFLDGC GATSCHEREK ALDVFFEIRS LRSQAAKDVS KRDKKKKKSS  600
KGPSTKKAKP TPATSSAVPE LLAQTNVHQF QSAQDAQGNT TIGRPLYYQA FSSAPMQPNQ  660
IYMHPNMHTM PLCAPQQDFS AYSAMRPNSN FGGAKNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-21	FAR1 family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G05610.1