PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G06250.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 420aa MW: 41596.9 Da PI: 6.32

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G06250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.3e-12	215	260	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq ONIVA06G06250.1 215 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 260 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS 60 QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ AGGGEEDGSG AFSPLPLFTD 120 RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA GQPPFGQGGS MSGQSFGGPA 180 ASGGTAPVTS SGGGGTAPPR QQRVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNA 240 NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSNGSGGK 300 ASKGGTGGEG GGGGGGGGGG GTGGGMRVTE QQVAKMMEED MGTAMQYLQG KGLCLMPISL 360 ASAISSATSS ASLLSRPSIR HAGAPPQTML DAAGPTSPAA MSNGDDPRHA KADGGAGGTQ

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS  60
QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ AGGGEEDGSG AFSPLPLFTD  120
RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA GQPPFGQGGS MSGQSFGGPA  180
ASGGTAPVTS SGGGGTAPPR QQRVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNA  240
NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSNGSGGK  300
ASKGGTGGEG GGGGGGGGGG GTGGGMRVTE QQVAKMMEED MGTAMQYLQG KGLCLMPISL  360
ASAISSATSS ASLLSRPSIR HAGAPPQTML DAAGPTSPAA MSNGDDPRHA KADGGAGGTQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	225	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-38	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G06250.1