PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G06960.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 444aa MW: 47259.8 Da PI: 5.1027

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G06960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.3e-12	293	338	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq ONIVA06G06960.1 293 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 338 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT 60 MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG VLQCNSSGTF 120 DAKLDTPGLA ELPHALSSSI DSNVNLDAFG FQGAQNVAML NKTSLPNGNP SLFDNAAIAS 180 LHDSKEFLNG GSIPSFGTVL QALGAGGLKA AQQEQNIRNI PLPTFTSGSH LAVTDAQGPP 240 LPSKIPPLIH DHNSEYPINH SSDVEPQANS APGNSANAKP RTRARRGQAT DPHSIAERLR 300 REKISERMKN LQDLVPNSNK ADKASMLDEI IDYVKFLQLQ VKVLSMSRLG APGAVLPLLR 360 ESQTECHSNP SLSASTISQG PPDMPDSEDS SAFEQEVVKL METSITSAMQ YLQNKGLCLM 420 PIALASAISN QKGMAAAAAI PPEK

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG VLQCNSSGTF  120
DAKLDTPGLA ELPHALSSSI DSNVNLDAFG FQGAQNVAML NKTSLPNGNP SLFDNAAIAS  180
LHDSKEFLNG GSIPSFGTVL QALGAGGLKA AQQEQNIRNI PLPTFTSGSH LAVTDAQGPP  240
LPSKIPPLIH DHNSEYPINH SSDVEPQANS APGNSANAKP RTRARRGQAT DPHSIAERLR  300
REKISERMKN LQDLVPNSNK ADKASMLDEI IDYVKFLQLQ VKVLSMSRLG APGAVLPLLR  360
ESQTECHSNP SLSASTISQG PPDMPDSEDS SAFEQEVVKL METSITSAMQ YLQNKGLCLM  420
PIALASAISN QKGMAAAAAI PPEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-57	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G06960.1