PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G06960.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 401aa MW: 42799 Da PI: 5.3987

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G06960.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.1e-12	250	295	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq ONIVA06G06960.2 250 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 295 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT 60 MLANGCLPYN TQAHPLSGQI LPKAPTLCSA FQNVSSFMEP VNLDAFGFQG AQNVAMLNKT 120 SLPNGNPSLF DNAAIASLHD SKEFLNGGSI PSFGTVLQAL GAGGLKAAQQ EQNIRNIPLP 180 TFTSGSHLAV TDAQGPPLPS KIPPLIHDHN SEYPINHSSD VEPQANSAPG NSANAKPRTR 240 ARRGQATDPH SIAERLRREK ISERMKNLQD LVPNSNKADK ASMLDEIIDY VKFLQLQVKV 300 LSMSRLGAPG AVLPLLRESQ TECHSNPSLS ASTISQGPPD MPDSEDSSAF EQEVVKLMET 360 SITSAMQYLQ NKGLCLMPIA LASAISNQKG MAAAAAIPPE K

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKAPTLCSA FQNVSSFMEP VNLDAFGFQG AQNVAMLNKT  120
SLPNGNPSLF DNAAIASLHD SKEFLNGGSI PSFGTVLQAL GAGGLKAAQQ EQNIRNIPLP  180
TFTSGSHLAV TDAQGPPLPS KIPPLIHDHN SEYPINHSSD VEPQANSAPG NSANAKPRTR  240
ARRGQATDPH SIAERLRREK ISERMKNLQD LVPNSNKADK ASMLDEIIDY VKFLQLQVKV  300
LSMSRLGAPG AVLPLLRESQ TECHSNPSLS ASTISQGPPD MPDSEDSSAF EQEVVKLMET  360
SITSAMQYLQ NKGLCLMPIA LASAISNQKG MAAAAAIPPE K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	9e-58	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G06960.2