PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G07020.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 237aa    MW: 27543 Da    PI: 9.525
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G07020.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-17139229199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l+lp +f +++  + +++ t++l de+  +++  +    ++++  l++GW++F  a++L +gD +vF+l++r++f  +v
  ONIVA06G07020.1 139 FVKPMLQSHVTGGFWLSLPTHFSRKYL-P-KRDETIRLVDEEDDEFDTLY--LANKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRTKF--KV 224
                      89************************5.3.35669***************..555555..9************************99999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       ++r+
  ONIVA06G07020.1 225 YIIRA 229
                      99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESAAKPSP VKQRKRKARA  60
LPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY  120
AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD  180
EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRT KFKVYIIRAS SYYETDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15484RKRKARALPGAGEDAPLRRSGRVANLPEKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-63B3 family protein