PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G07230.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 379aa MW: 40495.5 Da PI: 6.9071

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G07230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.4	1.7e-13	14	58	7	55
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r++k g+WvAeIr p++ rkr++lg+++++e+Aa+a +aa +l+g ONIVA06G07230.1 14 RRYK-GGKWVAEIRLPNS---RKRIWLGSYDSPEKAARAFDAAFICLRG 58 5666.8*******933...5*******************999998 PP
2	AP2	52.6	1.1e-16	198	247	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr + +g+W+AeIr ps+ r+r +lg+++t+e+Aa+a +aa +l+g ONIVA06G07230.1 198 KYKGVRLRQ-WGKWAAEIRLPSS---RRRTWLGSYDTPEKAARAFDAAFICLRG 247 8***998.******965...4*******************999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MQASTTQPAP EKERRYKGGK WVAEIRLPNS RKRIWLGSYD SPEKAARAFD AAFICLRGGE 60 AITGLNFPES PSAVVARTTD PREVLAFATS HACQSAVVVG CRHCARRRSS GGGGDRLRSP 120 QTWANAAPPP PVQVAGGSFD LSQLPLYSPM TTPAIEHWEK DNVEGDIPVG SEMFVETSSN 180 SIYIGAKSAA QAAAEMRKYK GVRLRQWGKW AAEIRLPSSR RRTWLGSYDT PEKAARAFDA 240 AFICLRGVQA IAGLNFPVSP PPPPSATART GDLREVYTFA VSHANQPSAE APAAIVVPAQ 300 VATADSDPDD AVRGNVTPPP VQVAAGSLDW SQFMANPPPM YSPTATAGSQ AMWPVTAPAA 360 ESDGEDDELA TTCLWSFDA

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MQASTTQPAP EKERRYKGGK WVAEIRLPNS RKRIWLGSYD SPEKAARAFD AAFICLRGGE  60
AITGLNFPES PSAVVARTTD PREVLAFATS HACQSAVVVG CRHCARRRSS GGGGDRLRSP  120
QTWANAAPPP PVQVAGGSFD LSQLPLYSPM TTPAIEHWEK DNVEGDIPVG SEMFVETSSN  180
SIYIGAKSAA QAAAEMRKYK GVRLRQWGKW AAEIRLPSSR RRTWLGSYDT PEKAARAFDA  240
AFICLRGVQA IAGLNFPVSP PPPPSATART GDLREVYTFA VSHANQPSAE APAAIVVPAQ  300
VATADSDPDD AVRGNVTPPP VQVAAGSLDW SQFMANPPPM YSPTATAGSQ AMWPVTAPAA  360
ESDGEDDELA TTCLWSFDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	3e-24	ERF family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G07230.1