PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G08040.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 261aa MW: 26491.6 Da PI: 7.1169

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G08040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H ONIVA06G08040.1 64 FECHYCRRNFPTSQALGGHQNAH 86 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MAAPHGMHGV AAAAPDATIR LFGRDVVSND DAVVVVVDGQ LPKEEAEEEA GGGAAAAAGE 60 TRRFECHYCR RNFPTSQALG GHQNAHKRER QHARRAHLEA SLAAAHYLGQ SAHLVYGGAA 120 LFGYGGHAAA VSPQYGPVWA SSAVAPPGLY ATSMGMARPA AYGAGVDVSA LWRASSSSSS 180 SPPMMGSGGG GAFGTVAGGG RHGEAAAAAL VGCRAGKDEN VVMSVVTSLP SLPSWQLPAP 240 EKMGRSELGQ EAGVVSLELR L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	1e-18	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G08040.1