PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G09330.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 400aa    MW: 40134.3 Da    PI: 9.8127
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G09330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.42e-41662462137
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      
  ONIVA06G09330.1  66 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrla 159
                      789******************************************************************9999899999999988888999999 PP

              TCP  89 ..................................kaaksaa.kskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137
                                                        +  +s++ +   s +s +  l+++  s   + a a+ +r+ r++++m+++++ +
  ONIVA06G09330.1 160 glagprfgggaraadawdrvvglgfggaadapssA-TSSSTsPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQYQ 246
                      99999999999999***********9999999853.3333336666666666667777744422333333566668888888887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    
MDVTGDGGGG GRRPNFPLQL LGKKEEQTCS TSQTAGAGGG GVVGANGSAA AAQGELQVRT  60
KAAAPPPKRT STKDRHTKVD GRGRRIRMPA ICAARVFQLT RELGHKTDGE TIEWLLQQAE  120
PAVIAATGTG TIPANFTSLN ISLRSSGSSL SIPSHLRLAG LAGPRFGGGA RAADAWDRVV  180
GLGFGGAADA PSSATSSSTS PLLLSFHSGS VGLDVSPPSA STSPAAADLS RKRRWEQEMQ  240
QQQQYQQQMA GYTQSQIPAG TVWMVPSSNA QAAGGGAPPG GGGESIWTFP QSGSGGGGGA  300
ATVYRGVPSG LHFMNFPATP MALLPGGQQL GLAGAGGGGE GHPGILAALN AYRAQAAQPD  360
AGAAAQNGAQ GSSQHRQHQH HGGGGGGGDE RHESMSASDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.13e-45TCP family protein