PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G11110.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-X1

Protein Properties

Length: 1117aa MW: 119949 Da PI: 8.2027

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G11110.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	21.6	4.8e-07	387	404	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H Cq +CH+GpC++C ONIVA06G11110.1 387 CGNHACQDICHPGPCGEC 404 ****************** PP
2	zf-NF-X1	22.7	2.1e-07	445	462	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ +CHeG+CppC ONIVA06G11110.1 445 CGVHRCKVTCHEGDCPPC 462 ****************** PP
3	zf-NF-X1	16.4	2e-05	540	558	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H Cq lCH G CppC ONIVA06G11110.1 540 CGQHGCQLLCHSGHCPPCL 558 ******************6 PP
4	zf-NF-X1	18.7	3.7e-06	650	666	1	17
zf-NF-X1 1 CGkHkCqklCHeGpCpp 17 CG+H C++ CH+ pC+p ONIVA06G11110.1 650 CGMHACNRSCHPSPCDP 666 ***************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1117 aa Download sequence
MSSSDRRRGG NGGGGGGPVA VPSSRAVWRP RSTAPDIPPP PRAAAPAPDR IGPILPSPNP 60 ASEDRPQQQQ RRPRRRNHGG GGQRRGPPQE RPSAAPPPPP PQQQQRQQHA APTPTRAAAP 120 APARVAATKA AAGGDGAVPQ LVQEIQDKLA RGAVECMICY DMVRRSAPVW SCGSCFSIFH 180 LPCIRKWARS PASAADASDP DSSWRCPGCQ SVHAVPAREL AYTCFCGRRR EPPNDLFLTP 240 HSCGEPCSKP LEKADPAVKA DDAAATRCPH VCVLQCHPGP CPPCKAFAPD RLCPCGKQTI 300 VRRCADRTTP VTCGQRCDRL LPCRRHRCEK VCHTGPCGDC NVLISARCFC GKKTETLLCG 360 EMELKGNLSE KDGVFSCSEA CSHMLSCGNH ACQDICHPGP CGECELMPGK VTACHCGKTR 420 LLEKRASCLD PIPTCDKVCD KKLPCGVHRC KVTCHEGDCP PCVVRVEQRC RCGSSGQMVE 480 CYKVLEEEFR CNKPCGRKKN CGRHRCSECC CPLSKPLARL EGGNWDPHLC QIPCGKKLRC 540 GQHGCQLLCH SGHCPPCLET IFNDLTCACG RTSIPPPLPC GTPTPSCPHQ CLVPQPCGHP 600 ATHQCHFGDC PPCVVPVMRE CIGGHVVLRN IPCGSKDIRC NQPCGKNRQC GMHACNRSCH 660 PSPCDPPPAN GDASSSTGGR ASCGQVCGAP RRECKHTCTA PCHPSSPCPD LRCEFPMTIA 720 CSCGRITATV PCGAGGTANG DNMFEVSIIQ KLPMPLQPVE SDGRRVPLGQ RKLSCDEDCA 780 KMERKRVLAE AFDITPPNLD ALHFGENSNA SDLLSDLFRR EPKWVMAIEE RCKFLVLGKT 840 RGNSSGNLKV HVFCHMTKDK RDAIRVIADR WKLSVQAAGW EPKRFITIHP TPKSKAPARI 900 LGSKPGVFVA ASHPFFDPLV DMDPRLVVAM LDLPRDADVS ALVLRFGGEC ELVWLNDKNA 960 VAVFNDPARA ATALRRLDYG SAYQGAAVFL PSSSAQPGNV WVAGQKDGVA ATKSSANPWK 1020 KATASEPDPS SGDWTGVLGQ APGSVWRRGG DTVAQVMGTS NRWNALESDA ATSSRPVEES 1080 KPAPRTDAVS SAGPSTAPPV SKMQPEVEVD DWEEACE

Sequence ? help Back to Top

Protein Sequence Length: 1117 aa Download sequence

MSSSDRRRGG NGGGGGGPVA VPSSRAVWRP RSTAPDIPPP PRAAAPAPDR IGPILPSPNP  60
ASEDRPQQQQ RRPRRRNHGG GGQRRGPPQE RPSAAPPPPP PQQQQRQQHA APTPTRAAAP  120
APARVAATKA AAGGDGAVPQ LVQEIQDKLA RGAVECMICY DMVRRSAPVW SCGSCFSIFH  180
LPCIRKWARS PASAADASDP DSSWRCPGCQ SVHAVPAREL AYTCFCGRRR EPPNDLFLTP  240
HSCGEPCSKP LEKADPAVKA DDAAATRCPH VCVLQCHPGP CPPCKAFAPD RLCPCGKQTI  300
VRRCADRTTP VTCGQRCDRL LPCRRHRCEK VCHTGPCGDC NVLISARCFC GKKTETLLCG  360
EMELKGNLSE KDGVFSCSEA CSHMLSCGNH ACQDICHPGP CGECELMPGK VTACHCGKTR  420
LLEKRASCLD PIPTCDKVCD KKLPCGVHRC KVTCHEGDCP PCVVRVEQRC RCGSSGQMVE  480
CYKVLEEEFR CNKPCGRKKN CGRHRCSECC CPLSKPLARL EGGNWDPHLC QIPCGKKLRC  540
GQHGCQLLCH SGHCPPCLET IFNDLTCACG RTSIPPPLPC GTPTPSCPHQ CLVPQPCGHP  600
ATHQCHFGDC PPCVVPVMRE CIGGHVVLRN IPCGSKDIRC NQPCGKNRQC GMHACNRSCH  660
PSPCDPPPAN GDASSSTGGR ASCGQVCGAP RRECKHTCTA PCHPSSPCPD LRCEFPMTIA  720
CSCGRITATV PCGAGGTANG DNMFEVSIIQ KLPMPLQPVE SDGRRVPLGQ RKLSCDEDCA  780
KMERKRVLAE AFDITPPNLD ALHFGENSNA SDLLSDLFRR EPKWVMAIEE RCKFLVLGKT  840
RGNSSGNLKV HVFCHMTKDK RDAIRVIADR WKLSVQAAGW EPKRFITIHP TPKSKAPARI  900
LGSKPGVFVA ASHPFFDPLV DMDPRLVVAM LDLPRDADVS ALVLRFGGEC ELVWLNDKNA  960
VAVFNDPARA ATALRRLDYG SAYQGAAVFL PSSSAQPGNV WVAGQKDGVA ATKSSANPWK  1020
KATASEPDPS SGDWTGVLGQ APGSVWRRGG DTVAQVMGTS NRWNALESDA ATSSRPVEES  1080
KPAPRTDAVS SAGPSTAPPV SKMQPEVEVD DWEEACE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	76	RRPRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G11110.1