PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G12870.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YB

Protein Properties

Length: 252aa MW: 26141.3 Da PI: 5.5502

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G12870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	158	1.5e-49	29	123	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdr++Pianv+rim++vlP +akis+dake++qecvsefisfvt+ea+d+c+re+rkt++++dl+wa+ lGf+dyv pl++yl++ re e ONIVA06G12870.1 29 VREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKTVTAEDLVWAMDRLGFDDYVPPLTAYLRRMREYE 122 69******************************************************************************************99 PP NF-YB 95 g 95 g ONIVA06G12870.1 123 G 123 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MEPAFPNGGA AAPPPPIAAE QLPPAAAVVR EQDRLMPIAN VIRIMRRVLP PHAKISDDAK 60 EVIQECVSEF ISFVTGEAND RCHREHRKTV TAEDLVWAMD RLGFDDYVPP LTAYLRRMRE 120 YEGGGSGGGG GGGRGAAAAP AVVPPPPPPP PPPEDAFRYV QVHHPVYAAP GEPVQGYGYP 180 VAMSSALPAP HVHVGVRGGG QHEVFGGGPA PLAVYYGGAP YGEASSRGGC SAADEGSSSS 240 SASPAPVGPN YE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	5e-52	NF-YB family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G12870.1