PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G15960.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 238aa MW: 27013 Da PI: 10.0929

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G15960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.6	6.8e-18	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kri+n+ rqv fskRr ++KKA+EL + C+aeva+++ s+ gk++ + ONIVA06G15960.1 9 KRIKNEEARQVCFSKRRPSVFKKASELYTVCGAEVAMLVKSPAGKFFSF 57 79********************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MTKRKIEIKR IKNEEARQVC FSKRRPSVFK KASELYTVCG AEVAMLVKSP AGKFFSFGAP 60 SVGFVLSRFH ATTTSRKHSS MGVTTQHDNS ATIKLHELNQ QHIELQNQLQ AQNEKMKALQ 120 EVAKKESGGK VMGWLNSKVE DICQEDLEEF KMVLESLKYL TRGIINQLFQ NYAMFSNMMR 180 VQHCVTALPN QQFLPSSEDV KPMIHHVPSS SYGWNTSIDS KPNSSDAHVV GARRYFPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-24	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G15960.1