PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G18720.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 294aa    MW: 30880.2 Da    PI: 5.4958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G18720.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-08199245455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + + + + RR+ri +++  L+el+P+      +K++ +++L +A+ Y+k +q
  ONIVA06G18720.1 199 TQSSAAKSRRERISERLRALQELVPSG-----GKVDMVTMLDRAISYVKFMQ 245
                      56677899*****************98.....8****************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MAMVAGDEAM SVPWHDVGVV VDPEAAGTAP FDAGAGYVPP YGQCQYYYYY DDHHHHPCST  60
ELIHAGDAGS AVAVAYDGVD GWVHAAAAAT SPSSSSALTF DGHGAEEHSA VSWMDMDMDA  120
HGAAPPLIGY GPTAATSSPS SCFSSGGSGD SGMVMVTTTT PRSAAASGSQ KRARPPPSPL  180
QGSELHEYSK KQRANNKETQ SSAAKSRRER ISERLRALQE LVPSGGKVDM VTMLDRAISY  240
VKFMQMQLRV LETDAFWPAS DGATPDISRV KDALDAIILS SSSPSQKASP PRSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.19e-36bHLH family protein