PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G20030.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 701aa MW: 73334.1 Da PI: 6.821

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G20030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.2	1.3e-10	302	358	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g ONIVA06G20030.1 302 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 358 57*****************5444.2455535555.7799999***********98 PP
2	AP2	49.7	9e-16	401	452	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g ONIVA06G20030.1 401 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 452 89**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MASANNWLGF SLSGQENPQP HQDSSPPAAI DISGAGDFYG LPTSQPTAAD AHLGVAGHHH 60 NASYGIMEAF NRGAQEAQDW NMRGLDYNGG ASELSMLVGS SGGKRAAAVE ETEPKLEDFL 120 GGNSFVSEQD HHAAGGFLFS GVPMASSTNS NSGSNTMELS MIKTWLRNNG QVPAGHQPQQ 180 QQPAAAAAAA QQQAHEAAEM STDASASSFG CSSDAMGRSN NGGAVSAAAG GTSSQSLALS 240 MSTGSHSHLP IVVAGGGNAS GGAAESTSSE NKRASGAMDS PGGGAIEAVP RKSIDTFGQR 300 TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD KEDKAARAYD LAALKYWGTT 360 TTTNFPISNY EKELDEMKHM TRQEYIAYLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG 420 RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSTLPVGGA 480 ARRLKEAADH AEAAGATIWR AADMDGAGVI SGLADVGMGA YAASYHHHHH HHGWPTIAFQ 540 QPPPLAVHYP YGQAPAAPSR GWCKPEQDAA VAAAAHSLQD LQQLHLGSAA AHNFFQASSS 600 STVYNGGGGG YQGLGGNAFL MPASTVVADQ GHSSTATNHG NTCSYGNEEQ GKLIGYDAMA 660 MASGAAGGGY QLSQGSASTV SIARANGYSA NWSSPFNGAM G

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MASANNWLGF SLSGQENPQP HQDSSPPAAI DISGAGDFYG LPTSQPTAAD AHLGVAGHHH  60
NASYGIMEAF NRGAQEAQDW NMRGLDYNGG ASELSMLVGS SGGKRAAAVE ETEPKLEDFL  120
GGNSFVSEQD HHAAGGFLFS GVPMASSTNS NSGSNTMELS MIKTWLRNNG QVPAGHQPQQ  180
QQPAAAAAAA QQQAHEAAEM STDASASSFG CSSDAMGRSN NGGAVSAAAG GTSSQSLALS  240
MSTGSHSHLP IVVAGGGNAS GGAAESTSSE NKRASGAMDS PGGGAIEAVP RKSIDTFGQR  300
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD KEDKAARAYD LAALKYWGTT  360
TTTNFPISNY EKELDEMKHM TRQEYIAYLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG  420
RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSTLPVGGA  480
ARRLKEAADH AEAAGATIWR AADMDGAGVI SGLADVGMGA YAASYHHHHH HHGWPTIAFQ  540
QPPPLAVHYP YGQAPAAPSR GWCKPEQDAA VAAAAHSLQD LQQLHLGSAA AHNFFQASSS  600
STVYNGGGGG YQGLGGNAFL MPASTVVADQ GHSSTATNHG NTCSYGNEEQ GKLIGYDAMA  660
MASGAAGGGY QLSQGSASTV SIARANGYSA NWSSPFNGAM G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-121	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G20030.1