PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G22830.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 551aa MW: 57915.6 Da PI: 8.2145

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G22830.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.5	3.2e-15	341	387	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+r+N++f++Lr llP + p+ K +Ka+iL ++eY+ +L ONIVA06G22830.1 341 HMISERRRRERLNDSFQTLRALLPLP---PDSKKDKAAILASTTEYMDKL 387 8899********************...***************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MDAIFALPPD ARARAMGRAA ARLPGCLYLC LWAPAAAIAG GVQPNHLFCL DAWIGGGGGV 60 GAGGGGGDRA LELFEAYRGA LCAAVSGCVP GWAYKEGAAC MELTEHDLAA SASLQVQQQF 120 YHETGTKMAV FMGCDSGEIE VGLSAASATA TAAVVGEMQQ SILEELIQMP PPPPSPSSSS 180 LLSLSVGSPE YSSLVRSMAT SVGASAAADP SPVHGGLLAP VYGEFPGSDD DAAMAQAMLA 240 VISTPAPPPP PWRPPRRRAR SSSSPRRATA FKAYNAALSP RARPRPGAPG QRMIKTGISL 300 LASVHMQTRS RELAAARQRD THAAPPPPPP PPPPSSSQLH HMISERRRRE RLNDSFQTLR 360 ALLPLPPDSK KDKAAILAST TEYMDKLISQ VSELGEKNRQ LEAQLAARSG EAQWPAASGG 420 GGGESSSERV QVDVVIAGSS ASTDQPREVS IRVTVRAECD VSELVVAVLA RLREMGRFAV 480 VSVDAGRRSS SKLWRRPWTA RRGDSAAAAG GATATDIAAF FKFQRTPFMH SKNYDQSDDL 540 EGEAKLLPLD S

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MDAIFALPPD ARARAMGRAA ARLPGCLYLC LWAPAAAIAG GVQPNHLFCL DAWIGGGGGV  60
GAGGGGGDRA LELFEAYRGA LCAAVSGCVP GWAYKEGAAC MELTEHDLAA SASLQVQQQF  120
YHETGTKMAV FMGCDSGEIE VGLSAASATA TAAVVGEMQQ SILEELIQMP PPPPSPSSSS  180
LLSLSVGSPE YSSLVRSMAT SVGASAAADP SPVHGGLLAP VYGEFPGSDD DAAMAQAMLA  240
VISTPAPPPP PWRPPRRRAR SSSSPRRATA FKAYNAALSP RARPRPGAPG QRMIKTGISL  300
LASVHMQTRS RELAAARQRD THAAPPPPPP PPPPSSSQLH HMISERRRRE RLNDSFQTLR  360
ALLPLPPDSK KDKAAILAST TEYMDKLISQ VSELGEKNRQ LEAQLAARSG EAQWPAASGG  420
GGGESSSERV QVDVVIAGSS ASTDQPREVS IRVTVRAECD VSELVVAVLA RLREMGRFAV  480
VSVDAGRRSS SKLWRRPWTA RRGDSAAAAG GATATDIAAF FKFQRTPFMH SKNYDQSDDL  540
EGEAKLLPLD S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	261	PRRRARS
2	345	350	ERRRRE
3	346	373	RRRRERLNDSFQTLRALLPLPPDSKKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-20	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G22830.1