PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G24670.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 397aa MW: 42817.5 Da PI: 7.6627

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G24670.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	226	245	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ ONIVA06G24670.1 226 FSCPVCYKTFNRYNNMQMHM 245 89*****************9 PP
2	zf-C2H2	14.1	0.00014	310	332	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ ONIVA06G24670.1 310 FMCRKCGKAFAVRGDWRTHEKNC 332 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MGDPYTNFLR GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE 60 ALPLLSLTPS TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DGKRESPSAA 120 AAADDQAAEV TVALHIGLPS PSPSDAAAAA GNQAAAAAAA AEASAAGGGS SRMQVEEEGG 180 EEEDEDEAAA TATLPLGCAS IGIGKLTKGQ YWIPTPSQIL IGPTQFSCPV CYKTFNRYNN 240 MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH 300 YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCAC GSDFKHKRSL KDHIRAFGRG 360 HAACGIDSFD DLDADDDPSS DLDHASASAS ASASRVG

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MGDPYTNFLR GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE  60
ALPLLSLTPS TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DGKRESPSAA  120
AAADDQAAEV TVALHIGLPS PSPSDAAAAA GNQAAAAAAA AEASAAGGGS SRMQVEEEGG  180
EEEDEDEAAA TATLPLGCAS IGIGKLTKGQ YWIPTPSQIL IGPTQFSCPV CYKTFNRYNN  240
MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH  300
YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCAC GSDFKHKRSL KDHIRAFGRG  360
HAACGIDSFD DLDADDDPSS DLDHASASAS ASASRVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-115	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G24670.1