PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G25000.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 280aa MW: 28880.8 Da PI: 9.6014

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G25000.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	85	110	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck G++C+FaHg+ ONIVA06G25000.2 85 KTRMCNKYNTAEGCKWGSKCHFAHGE 110 89**********************96 PP
2	zf-CCCH	36.7	7.1e-12	245	270	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ ONIVA06G25000.2 245 FKTKLCENFNK-GSCTFGDRCHFAHGE 270 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MEAGGGKRAA PEGTNGAAKR AREIVVEGTS GCPFGSSCHF LHNFPGGYQA AAKMTSHGGT 60 AVAAPPGRMP LGPGAPNGPP TSSVKTRMCN KYNTAEGCKW GSKCHFAHGE RELGKPMLLD 120 NSMPHPMGSM PFEAPPMPGP DIVPPSTFGA SATAKISVDA SLAGGIIGKG GTNTKHISRM 180 TGAKLAIRDN ESNPNLKNIE LEGTFDQIKH ASAMVTELIV RISGNAPPAK NPGKGSHAGG 240 PGSNFKTKLC ENFNKGSCTF GDRCHFAHGE SELRKPPAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-49	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G25000.2