PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G25740.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 362aa    MW: 40205.1 Da    PI: 7.923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G25740.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-11241191395
                      TT-EE--HHH.HTT..............---.....--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3  13 sgrlvlpkkfaeeh..............ggkke...esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 
                      ++rl++p +fa++               +   e   +   + +  + g++W+v+l+  +++ +    +l++GW+e + a+gL eg  vv++l++
  ONIVA06G25740.1  24 LHRLSVPGEFAARLddddaagvgeeeeeE---EsgrRAAAVLVVGPLGKVWRVELR--RSPAGdgeAWLGGGWSELAAAHGLGEGWGVVLRLER 112
                      5899*******999999999987654432...1455677899999**********5..54444447*************************998 PP

                      SSEE..EEE CS
               B3  87 rsefelvvk 95 
                      r  +   ++
  ONIVA06G25740.1 113 RGVA--SLR 119
                      7666..444 PP
2B343.94.4e-14147236397
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      k l ++d      + +p kf+++h  +  +++++  ++  + g+ W+v+l  ++ +  ++l++GW  F  a++L eg +++F+++g++ f  +v
  ONIVA06G25740.1 147 KLLQQEDL---EKMKIPEKFVQQHltETYTNNHQNAIIVCPLGKFWRVEL--QREQPDVLLRDGWAPFLAAHDLSEGNILLFRYEGNMVF--TV 233
                      55533333...3478**********944445667899999**********..999999****************************9999..66 PP

                      EEE CS
               B3  95 kvf 97 
                       vf
  ONIVA06G25740.1 234 EVF 236
                      665 PP
3B339.11.3e-12270351486
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      v ++s  +++ + ++  +f++++g+ +++ +tl++  ++  sW+v ++ + +  +y+ + GW++F+ +n++kegD ++F  ++
  ONIVA06G25740.1 270 VHLSSGKGREELRSVRGTFCSQIGLLEACAITLKISMKKKGSWRVAFK-TANTYGYINGPGWRKFCLENEVKEGDCLTFNAIE 351
                      55666777778889999******************************5.5555579***********************9665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE EEESGRRAAA  60
VLVVGPLGKV WRVELRRSPA GDGEAWLGGG WSELAAAHGL GEGWGVVLRL ERRGVASLRV  120
FDPGFCLARF CTPHAGMRTK DRPRFIKLLQ QEDLEKMKIP EKFVQQHLTE TYTNNHQNAI  180
IVCPLGKFWR VELQREQPDV LLRDGWAPFL AAHDLSEGNI LLFRYEGNMV FTVEVFLQNG  240
CLKEYKTAAL YLTDGTEGPS NAPQQSAAKV HLSSGKGREE LRSVRGTFCS QIGLLEACAI  300
TLKISMKKKG SWRVAFKTAN TYGYINGPGW RKFCLENEVK EGDCLTFNAI ETTVWHVVIV  360
HC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-13B3 family protein