PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G27450.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 370aa MW: 39072.9 Da PI: 6.6161

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G27450.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21	7e-07	52	97	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H H +vp+ ONIVA06G27450.1 52 VWVCEVCEVAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 97 689*****************************44677777888775 PP
2	CCT	70.3	4.7e-24	294	337	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a ONIVA06G27450.1 294 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 337 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MELRKYWGVG GRRCGACEAS PAAVHCRGCG GVYLCTACDA RPGHARAAHE RVWVCEVCEV 60 APAAVTCKAD AAVLCAACDA DIHDANPLAR RHARVPVAPI GSAAAAAVAA EAMLFGVAAA 120 GAEAEAVEEK AAAEHHHHQQ RQQHGALNLN VEAKDMKLDY LFSDLDPYLN VEFARFPHAD 180 SVVPNGAGAG AAIELDFTCG LGVGVGGAKQ SYSSYTATDL AHSGSSSEVG VVPEAMCGGG 240 GAIDLDFTRP KPQPYMPYTA TPPPSHSVVS AQMSSSVVDV GVVPERAAAM GEGREARLMR 300 YREKRKNRRF EKTIRYASRK AYAETRPRIK GRFAKRADHD ADDADADADD PAAVPSSYML 360 DFGYGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MELRKYWGVG GRRCGACEAS PAAVHCRGCG GVYLCTACDA RPGHARAAHE RVWVCEVCEV  60
APAAVTCKAD AAVLCAACDA DIHDANPLAR RHARVPVAPI GSAAAAAVAA EAMLFGVAAA  120
GAEAEAVEEK AAAEHHHHQQ RQQHGALNLN VEAKDMKLDY LFSDLDPYLN VEFARFPHAD  180
SVVPNGAGAG AAIELDFTCG LGVGVGGAKQ SYSSYTATDL AHSGSSSEVG VVPEAMCGGG  240
GAIDLDFTRP KPQPYMPYTA TPPPSHSVVS AQMSSSVVDV GVVPERAAAM GEGREARLMR  300
YREKRKNRRF EKTIRYASRK AYAETRPRIK GRFAKRADHD ADDADADADD PAAVPSSYML  360
DFGYGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	3e-18	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G27450.1