PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G28660.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 253aa MW: 27292.6 Da PI: 9.0276

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G28660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.9e-18	114	168	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++l+L+ rqV vWFqNrRa+ k ONIVA06G28660.1 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTK 168 778899***********************************************98 PP
2	HD-ZIP_I/II	117.5	7.7e-38	114	202	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk++l+keq++lLE+sF+ ++ L++ +K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een++L++e eLr + ONIVA06G28660.1 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELR-R 202 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MEGEDLGSWL GLGIGGGGYA YGGDDCRRSP SSPSPVQMLF SQHVKEEITR GYDHGRDEEQ 60 ASGSKIMKGE RGARLRVMRS IRNSGGDGSR SPVLSLGDDG GDGGSGGGGG GGTRKKLQLT 120 KEQSTLLEDS FRVHNILSHA QKHELARQLK LKPRQVEVWF QNRRARTKLK QTEVDCEFLK 180 RCCESLTEEN KQLKHELMEL RRLASAAAGS QLYVQFPRAA AAAMVNVCPS CEKVTVMGGG 240 GGETGKSSSS YSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	171	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-47	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G28660.1