PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G28780.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GATA

Protein Properties

Length: 1812aa MW: 204410 Da PI: 6.8332

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G28780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	47.8	1.9e-15	257	293	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg Tp++Rrgpdg++tLCnaCGl+++ kg+ ONIVA06G28780.1 257 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 293 **977777*********************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 1812 aa Download sequence
MSHHDGSKPY QPRRGPERPP PPAPADDAAA HVAPTVDHLA AVAAEAEAMA RFEEEHRALG 60 AEEEDEEEED ELEEEEEEME EDEDAQHHEG VGGEVAVPMD AEAAAQLDPH GGMLAASGAV 120 QPMASNQLTL SFQGEVYVFD SVSPDKVQAV LLLLGGRELN PGLGSGASSS APYSKRLNFP 180 HRVASLMRFR EKRKERNFDK KIRYSVRKEV ALRMQRNRGQ FTSSKPKGDE ATSELTASDG 240 SPNWGSVEGR PPSAAECHHC GINAKATPMM RRGPDGPRTL CNACGLMWAN KGMLRDLSKA 300 PPTPIQVVAS VNDGNGSAAA PTTEQEIPAP ATVNGHESST YGYDHERGGG RGGYDDDRYH 360 GRYQNRAAGE DSSPRAKFRF DLRNWADSGF GASNDGPGIT QREGLMTYKQ FIQVLEDDIS 420 PAEAEKRYQE YRTEYITTQK RAYFDLNKND DRLKDKYHPT NLSSVIDRRN DSCKATAKDF 480 FHDLQNGTLD LGPGITAAAA SGSDGNSDDD GDSDKRRKHG RGSSKETDPL SGAPVAHPVS 540 SESRRVQVDI EQALALVHKL DTEKGIVGNI LSSGDHDKSD VDKSHIGSMG PIIIIRGLTT 600 VKGLEGVELL DTLLTYLWRI HGVDYYGMSE TNEAKGSRHV RADNKMSNTT NINAADWEKK 660 VDTFWQERLR GQDPMVILAA KDKIDAAAVE VLEPYVRKIR DEKYGWKYGC GAKGCTKLFH 720 APEFVHKHLR LKHPELVLEL TSKVREDLYF QNYMNDPNAP GGTPVMQQSA PDKSRQRPGM 780 DNRLRYDRAN RREYDRAERD GSRYGRGDRS PSLDGADDQM FDAFRGRGPN APFVPELPAP 840 PILMPIPGAG PLGPFVPAPP EIAMHMLREQ GPPPPFEPNG PPHANPGVLG PMMGGPAPII 900 TMPPSFRQDP RRLRRKVAFS LGEGALVKLG TEVVEAASVL TYFEHSMKQI ESEFTIMRAF 960 ISQVRDVAHD VEDIVDEYAY LAAQAIDTGT FFKRKFQQTK NVAAWQNISR QISQVETRIQ 1020 RLSAMRNRYG ISIDEKSSSN MSQYPRQLSV SDSAYLTDDT EIVGNASVTR RLTQWVLEER 1080 QDRSVMSTFG MGGVGKTTIA SSIFKNQQFM MAFACNAWIT LSQSYEIEDL LRQISKQLMD 1140 QQVYLASNVE AMNRIKLIEE LQIYLKRRKY LIVLDDVWDK DVWLFLNYAF VRNNLGGRVL 1200 ITTRKKDVAF LADHNCVVEL EALPHTEAWH LFCKKAFRRL EDKMCPENLR PWAEKIVTKC 1260 QGLPLAIVAI GSLLSYREFE EQEWKLFYNQ LGWQLANNPE LNWIANILNL SLNDLPSYLR 1320 SCFLYCSLFP EDCRIKRKMH VELWIAEGLV EERGDGTTME EVARCYLTEL TQRSLLAVIE 1380 RNACGRARTF RMHDLVREMA SIIAKKERLA FSYDNVGITQ VAHEYRRLWI QKDAQSLRYL 1440 GGSKLRSFVL LDIGEPSSWI YDALSRFRLL RVLCLRFANI EQVPGVVTEL YNLHYLDLSH 1500 TKVKHIPASF KNLINLQFLD IRSSYVEELP LEITLLTNLR HLYAYVIHDL QERSLDCISA 1560 TKIPGNICHL KNLQALQTVS ANKDLVSQLG NLTRMRSLCV MKALSNLKVF WLAGKLEGGV 1620 LPPMFAKLEK ITELKLDWSG LKKDHIESFS YMLNLVVLVL TGAYDGERLN FHAKWFPKLN 1680 LLQLADMEHL NRIEIEDGSM MCLRELDLVG LRNLNEVPKG IRYIRTLHEM IITDMPKEFI 1740 VKIQGSDRYI VQHVPNIHIF ESSDFQAVNN FIRLPHLTKR QFIVDFPHRP NGTVPYVSRA 1800 KCTIRLNYTW KF

Sequence ? help Back to Top

Protein Sequence Length: 1812 aa Download sequence

MSHHDGSKPY QPRRGPERPP PPAPADDAAA HVAPTVDHLA AVAAEAEAMA RFEEEHRALG  60
AEEEDEEEED ELEEEEEEME EDEDAQHHEG VGGEVAVPMD AEAAAQLDPH GGMLAASGAV  120
QPMASNQLTL SFQGEVYVFD SVSPDKVQAV LLLLGGRELN PGLGSGASSS APYSKRLNFP  180
HRVASLMRFR EKRKERNFDK KIRYSVRKEV ALRMQRNRGQ FTSSKPKGDE ATSELTASDG  240
SPNWGSVEGR PPSAAECHHC GINAKATPMM RRGPDGPRTL CNACGLMWAN KGMLRDLSKA  300
PPTPIQVVAS VNDGNGSAAA PTTEQEIPAP ATVNGHESST YGYDHERGGG RGGYDDDRYH  360
GRYQNRAAGE DSSPRAKFRF DLRNWADSGF GASNDGPGIT QREGLMTYKQ FIQVLEDDIS  420
PAEAEKRYQE YRTEYITTQK RAYFDLNKND DRLKDKYHPT NLSSVIDRRN DSCKATAKDF  480
FHDLQNGTLD LGPGITAAAA SGSDGNSDDD GDSDKRRKHG RGSSKETDPL SGAPVAHPVS  540
SESRRVQVDI EQALALVHKL DTEKGIVGNI LSSGDHDKSD VDKSHIGSMG PIIIIRGLTT  600
VKGLEGVELL DTLLTYLWRI HGVDYYGMSE TNEAKGSRHV RADNKMSNTT NINAADWEKK  660
VDTFWQERLR GQDPMVILAA KDKIDAAAVE VLEPYVRKIR DEKYGWKYGC GAKGCTKLFH  720
APEFVHKHLR LKHPELVLEL TSKVREDLYF QNYMNDPNAP GGTPVMQQSA PDKSRQRPGM  780
DNRLRYDRAN RREYDRAERD GSRYGRGDRS PSLDGADDQM FDAFRGRGPN APFVPELPAP  840
PILMPIPGAG PLGPFVPAPP EIAMHMLREQ GPPPPFEPNG PPHANPGVLG PMMGGPAPII  900
TMPPSFRQDP RRLRRKVAFS LGEGALVKLG TEVVEAASVL TYFEHSMKQI ESEFTIMRAF  960
ISQVRDVAHD VEDIVDEYAY LAAQAIDTGT FFKRKFQQTK NVAAWQNISR QISQVETRIQ  1020
RLSAMRNRYG ISIDEKSSSN MSQYPRQLSV SDSAYLTDDT EIVGNASVTR RLTQWVLEER  1080
QDRSVMSTFG MGGVGKTTIA SSIFKNQQFM MAFACNAWIT LSQSYEIEDL LRQISKQLMD  1140
QQVYLASNVE AMNRIKLIEE LQIYLKRRKY LIVLDDVWDK DVWLFLNYAF VRNNLGGRVL  1200
ITTRKKDVAF LADHNCVVEL EALPHTEAWH LFCKKAFRRL EDKMCPENLR PWAEKIVTKC  1260
QGLPLAIVAI GSLLSYREFE EQEWKLFYNQ LGWQLANNPE LNWIANILNL SLNDLPSYLR  1320
SCFLYCSLFP EDCRIKRKMH VELWIAEGLV EERGDGTTME EVARCYLTEL TQRSLLAVIE  1380
RNACGRARTF RMHDLVREMA SIIAKKERLA FSYDNVGITQ VAHEYRRLWI QKDAQSLRYL  1440
GGSKLRSFVL LDIGEPSSWI YDALSRFRLL RVLCLRFANI EQVPGVVTEL YNLHYLDLSH  1500
TKVKHIPASF KNLINLQFLD IRSSYVEELP LEITLLTNLR HLYAYVIHDL QERSLDCISA  1560
TKIPGNICHL KNLQALQTVS ANKDLVSQLG NLTRMRSLCV MKALSNLKVF WLAGKLEGGV  1620
LPPMFAKLEK ITELKLDWSG LKKDHIESFS YMLNLVVLVL TGAYDGERLN FHAKWFPKLN  1680
LLQLADMEHL NRIEIEDGSM MCLRELDLVG LRNLNEVPKG IRYIRTLHEM IITDMPKEFI  1740
VKIQGSDRYI VQHVPNIHIF ESSDFQAVNN FIRLPHLTKR QFIVDFPHRP NGTVPYVSRA  1800
KCTIRLNYTW KF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51600.2	8e-68	GATA family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G28780.1