PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G29820.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 21817.6 Da    PI: 6.6757
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G29820.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.4e-29959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s
  ONIVA06G29820.1  9 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 59
                     79***********************************************96 PP
2K-box32.63.3e-12831403698
            K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +++GedL+ L++ eL+ Leq+++ +lk      ++++ +q+e+ +kk k   e+ k+L+++l
  ONIVA06G29820.1  83 QQRMGEDLDGLEFDELRGLEQNVDAALK-----EYHVISTQTETYKKKVKHSYEAYKTLQQEL 140
                      699************************7.....59***********************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP  60
STDIKGIFDR YQQAIGTSLW IEQQRMGEDL DGLEFDELRG LEQNVDAALK EYHVISTQTE  120
TYKKKVKHSY EAYKTLQQEL GLCEEPAWFV DNTGGGWDGG AGAGAAADMF AFRVVPSQPN  180
LHGMAYGGNH DLRLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-42MIKC_MADS family protein