PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G00600.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 637aa MW: 67379.5 Da PI: 7.3363

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G00600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.1	1.9e-12	285	341	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g ONIVA07G00600.1 285 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 341 78*****************77776664346655.77****************98 PP
2	AP2	47.1	5.9e-15	386	435	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g ONIVA07G00600.1 386 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 435 9*************999754...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MTNSNNGNGG TNAAASGWLG FSLSPHMASS TMDEHHHVHH HQQQQQQQQQ HHQQQQHGLF 60 FPSVTTAAAA AAYGLAGDVV AATNGYYSQL ASMPLKSDGS LCIMEALRRT DQDHHGPKLE 120 DFLGAAQPAM ALSLDNTSSF YYGGGGAAAA GHGQHGYLQA CDLYGGPAAP SLVTAADEEA 180 AAAAAAMASW VAARGAATAY ATGAADANAA ENVLPSATAA QHLHHPLALS MSSGSLSSCI 240 TAGEYGMAAV AAADGGRKRG GAGGGGQKQP VHHRKSIDTF GQRTSQYRGV TRHRWTGRYE 300 AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHINFPL EDYQEELEEM 360 KNMTRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVSGNKD LYLGTFSTQE 420 EAAEAYDVAA IKFRGLNAVT NFDITRYDVD KIMASNTLLP ADLARRNAAT TTSKDDHSAA 480 AAGAIVSVHS AADIAVADTL WKATTAPRQQ QQHHDDVVLS GADQAAFSVL HDLVAVDAAA 540 AHQQQQQQQH MSMSAASSLV TSLSNSREGS PDRGGGLSML FAKPSPAVAA SAQQQASTKL 600 MAAPLPLGSW VSSPPASARP PAVSIAHMPL FAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MTNSNNGNGG TNAAASGWLG FSLSPHMASS TMDEHHHVHH HQQQQQQQQQ HHQQQQHGLF  60
FPSVTTAAAA AAYGLAGDVV AATNGYYSQL ASMPLKSDGS LCIMEALRRT DQDHHGPKLE  120
DFLGAAQPAM ALSLDNTSSF YYGGGGAAAA GHGQHGYLQA CDLYGGPAAP SLVTAADEEA  180
AAAAAAMASW VAARGAATAY ATGAADANAA ENVLPSATAA QHLHHPLALS MSSGSLSSCI  240
TAGEYGMAAV AAADGGRKRG GAGGGGQKQP VHHRKSIDTF GQRTSQYRGV TRHRWTGRYE  300
AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHINFPL EDYQEELEEM  360
KNMTRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVSGNKD LYLGTFSTQE  420
EAAEAYDVAA IKFRGLNAVT NFDITRYDVD KIMASNTLLP ADLARRNAAT TTSKDDHSAA  480
AAGAIVSVHS AADIAVADTL WKATTAPRQQ QQHHDDVVLS GADQAAFSVL HDLVAVDAAA  540
AHQQQQQQQH MSMSAASSLV TSLSNSREGS PDRGGGLSML FAKPSPAVAA SAQQQASTKL  600
MAAPLPLGSW VSSPPASARP PAVSIAHMPL FAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-128	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA07G00600.1