PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G04110.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 407aa    MW: 44524.6 Da    PI: 4.7753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G04110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.3e-12124224197
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr 87 
                      f+k+l+ sd   + r++ p   a+       + k  ++  l ++d++g  +++ +   +k++r++l+k Wk+F ++ +  +gD+v+F+  +d++
  ONIVA07G04110.1 124 FVKTLMISDFDFRIRFSAPMADAKGVfpplvDAKAVQP--LLVKDLHGSPMTFDY--GRKGKRVTLAKVWKKFRDDMDFVDGDSVIFMrrRDDD 213
                      899********************888**9986666676..999************..*******************************665566 PP

                      .SEE..EEEEE CS
               B3  88 .sefelvvkvf 97 
                       +++el+v+v+
  ONIVA07G04110.1 214 dDDGELYVGVR 224
                      79999999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MAAAAAPLAD DGDGIVDRAM WLACAAPNSG RLPAVGSVVF YFVDGHAAQF CQFPAPLLEQ  60
LAVPGPRVFL CTVAAVRLRA DALTNEAYAE ITLDPVADHD VPRLAPAPAP APAAAAGGQQ  120
LRYFVKTLMI SDFDFRIRFS APMADAKGVF PPLVDAKAVQ PLLVKDLHGS PMTFDYGRKG  180
KRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDDDDGELY VGVRCQRTLE RPLRNTMRRY  240
RPPTPPQAAV QEAVLAAAGH AAAGERFTVA YRSRQDGDEF VVPREAVEEG LRARLTSLAE  300
VEFVWAVEDG APPIVGPRGK VTAIATGQLW RNLEIVWDGN SEMDMSANFW QVRPVEEVDI  360
SPSTPPPKRL KNCEIDDTAS TSVSVDNGDE QVPTMRQRLE ALIPDNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-28ARF family protein