PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G19050.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 226aa MW: 23158.2 Da PI: 7.933

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G19050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.5	2e-28	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA r+ +Pv Gavg+++ ++++l+q ONIVA07G19050.1 2 SCNGCRVLRKGCSEGCVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSGGSWHLCQ 95 6*******************9999888999************************************************************ PP DUF260 90 lkaelal 96 ++++++l ONIVA07G19050.1 96 AAVDTVL 102 *999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MSCNGCRVLR KGCSEGCVLR PCLQWIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR 60 AAVFQSLLYE AAGRTINPVG GAVGLLSGGS WHLCQAAVDT VLRGGGIQPL PDQVDAAAAG 120 GRDVFASTAR RAMGGCSTFS TAKRSTTTTT TKNPGTPHDA AAAAPQPEPS CDLGLWLSPG 180 SPPAPGDRRS GGRRADTPSM NSEGSVTTCG VVGGGEREPE LLNLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-57	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA07G19050.1