PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G00920.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MIKC_MADS

Protein Properties

Length: 220aa MW: 24974.8 Da PI: 7.9772

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G00920.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.5	8.7e-24	10	56	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELS+LC+a++ +iifs +gkly+ ONIVA08G00920.1 10 RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD 56 8********************************************97 PP
2	K-box	21	1.4e-08	88	170	17	86
K-box 17 lqqelakLkkeienLqreqRhllGedL.............esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 +qe+ Lk+ei+ Lq+ +Rhl +++ e ++++eL+ Le+ Le + +iRs K+ +l++ e lq+k e ONIVA08G00920.1 88 PKQEAMVLKQEINLLQKGLRHLTLDKIkthgryiygnranEHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 170 456666666666666655555544444111111133333357************************************99765 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLATT 60 GTMEELIERY KSASGEQANA CGDQRMDPKQ EAMVLKQEIN LLQKGLRHLT LDKIKTHGRY 120 IYGNRANEHM TVEELNALER YLEIWMYNIR SAKEGMLKAA NEILQEKIVE QNGLIDVGMM 180 VADQQNGHFS TVPLLEEITN PLTILSGYST CRGSEMGYSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	2e-48	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G00920.1