PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G01810.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LSD

Protein Properties

Length: 106aa MW: 11619.4 Da PI: 9.2597

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G01810.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	28.5	2.6e-09	6	28	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC tlL Y rGA+++RC++C+ ONIVA08G01810.1 6 CSGCPTLLFYNRGASNIRCPSCN 28 **********************8 PP
2	zf-LSD1	33.2	8.4e-11	44	68	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+ P+GA+ V+Ca C V ONIVA08G01810.1 44 CGQCRTTLMHPPGASTVQCATCRYV 68 **********************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence
MSELICSGCP TLLFYNRGAS NIRCPSCNRL NSTRSANQIA HLTCGQCRTT LMHPPGASTV 60 QCATCRYVNH VRDARPQTVL VENPKTLDDK GKLVSNVVVG VTSWKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.1	9e-29	LSD family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G01810.1