PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G02550.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 247aa    MW: 26884.5 Da    PI: 5.8206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G02550.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-1079127354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +++  rE+ RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  ONIVA08G02550.1  79 TSKASREKIRRDKMNDRFLELGTTLEPG---KPVKSDKAAILSDATRMVIQL 127
                      67889**********************9...99*************988777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MSGTPADGGG GGSGDDWFLD CGILEDLPAA ACGAFPWDAS PSCSNPSVEV SSYVNTTSYV  60
LKEPGSNKRV RSGSCGRPTS KASREKIRRD KMNDRFLELG TTLEPGKPVK SDKAAILSDA  120
TRMVIQLRAE AKQLKDTNES LEDKIKELKA EKDELRDEKQ KLKVEKETLE QQVKILTATP  180
AYMPHPTLMP APYPQAPLAP FHHAQGQAAG QKLMMPFVGY PGYPMWQFMP PSEVDTSKDS  240
EACPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-72bHLH family protein