PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G03570.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LSD

Protein Properties

Length: 215aa MW: 22490.5 Da PI: 7.9433

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G03570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.3	5.9e-14	99	123	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV ONIVA08G03570.1 99 CSGCRNLLMYPAGATSVCCAVCSTV 123 ***********************99 PP
2	zf-LSD1	46	8.6e-15	138	162	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV ONIVA08G03570.1 138 CGGCHTLLMYIRGATSVQCSCCHTV 162 ************************9 PP
3	zf-LSD1	41.1	3e-13	176	200	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V ONIVA08G03570.1 176 CGNCRMLLMYQYGARSVKCAVCNFV 200 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MTSVKCTIPI PMLLMDYILS QAVVLVQKIL LMHLSAGFLS CRERKGDFSC LTAARICEAS 60 TSDAVVQAAG TAMPVPLAPY PTPPVPFTPP NGAQSQLVCS GCRNLLMYPA GATSVCCAVC 120 STVTAVPAPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGNCR 180 MLLMYQYGAR SVKCAVCNFV TSVGASPGID QKPSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	5e-60	LSD family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G03570.1