PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G03600.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 367aa MW: 37957.8 Da PI: 7.2569

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G03600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31	4.3e-10	88	113	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ ONIVA08G03600.1 88 FKTKLCCKFRA-GTCPYVTNCNFAHGM 113 69*******.***********95 PP
2	zf-CCCH	17.9	5.3e-06	170	195	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ ONIVA08G03600.1 170 YKGRHCKKFYTDEGCPYGDACTFLHD 195 77888********************7 PP
3	zf-CCCH	43.3	5.8e-14	246	271	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg ONIVA08G03600.1 246 WKTRICNKWEMTGYCPFGSKCHFAHG 271 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGG SSRAGSEQPP 60 PGKKSRGGGG GEGGGNTSKS RAIGKMFFKT KLCCKFRAGT CPYVTNCNFA HGMEELRKPP 120 PNWQEIVAAH EEATEAREEH QIPIMTSSGP TAGGDAGCGG GGGGGSGRAY KGRHCKKFYT 180 DEGCPYGDAC TFLHDEQSKA RESVAISLSP SVGGGGGGGS YNSAAAAAAS ASAAAGNGPM 240 QKPSNWKTRI CNKWEMTGYC PFGSKCHFAH GAAELHKYGG GLVDIDSRDA AATPDSKQAV 300 VSAKAPAETA AASTTVLPHA DVYHLGVQAQ RSTIAGQRSG QVQRPIQKWK GPDKISRIYG 360 DWIDETE

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGG SSRAGSEQPP  60
PGKKSRGGGG GEGGGNTSKS RAIGKMFFKT KLCCKFRAGT CPYVTNCNFA HGMEELRKPP  120
PNWQEIVAAH EEATEAREEH QIPIMTSSGP TAGGDAGCGG GGGGGSGRAY KGRHCKKFYT  180
DEGCPYGDAC TFLHDEQSKA RESVAISLSP SVGGGGGGGS YNSAAAAAAS ASAAAGNGPM  240
QKPSNWKTRI CNKWEMTGYC PFGSKCHFAH GAAELHKYGG GLVDIDSRDA AATPDSKQAV  300
VSAKAPAETA AASTTVLPHA DVYHLGVQAQ RSTIAGQRSG QVQRPIQKWK GPDKISRIYG  360
DWIDETE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	2e-93	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G03600.1