PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G03920.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 143aa    MW: 15722.1 Da    PI: 4.1267
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G03920.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26041.53.9e-13216754100
           DUF260  54 redamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                        + m+++vy A+ar++dP+ Ga+g ilklqqql++lkae a+++++
  ONIVA08G03920.1  21 TVISMAAVVYLADARVEDPILGAYGRILKLQQQLDRLKAERARQHHP 67 
                      5789**************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MERILGFSEA EKQGIRPNGS TVISMAAVVY LADARVEDPI LGAYGRILKL QQQLDRLKAE  60
RARQHHPATS SPAPADDVAL QPEPFHQPPA QPSTPPALAI PDEEEEEDND DDEDEDEEEG  120
QEEGEGHAPA DDDVPCAKRR KHN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-06LBD family protein