PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G08540.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 302aa MW: 29798.8 Da PI: 5.6838

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G08540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19	3e-06	16	58	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C ++ ++ +C + lC C + H H++vpl ONIVA08G08540.1 16 ACGVCGGA-ATVYCAADAAALCVPCDAAVHAAnplasrHDRVPL 58 6****9.*******************66899999999986 PP
2	CCT	66.6	6.7e-23	191	234	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re++++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a ONIVA08G08540.1 191 REERVRRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 234 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MASDGSASPA SCGGAACGVC GGAATVYCAA DAAALCVPCD AAVHAANPLA SRHDRVPLAV 60 AMAAASSGVY DHLFAPDDDA ASSWAAAAAA GAAVQGQGQG SPNDSSSSFT NDSAGGGGGG 120 GAERSLFDLL SDVDIMSCGG GGLASSFDGA AAPPLWLHPG QLAALTPWSP ADSVVVPTSA 180 AGAVAAAAAA REERVRRYRE KRKNRKFQKT IRYASRKAYA EARPRIKGRF VKRATTAAAS 240 SSSDDDSTAA AGVSGAGGAG AGATEEAKFW LSFSDDGRAD GVGFYMDSTT AATAAYGVVP 300 TF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	5e-10	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G08540.1