PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G16460.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26358.3 Da    PI: 8.7727
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G16460.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.32e-131050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ri n+ +    f kR++g+ KKA+ELS+LC ++ +++++++
  ONIVA08G16460.1 10 RIINDAKWRAAFKKRLKGLKKKASELSTLCSVDTCLMVYGE 50
                     77888888999****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MARNKVKLQR IINDAKWRAA FKKRLKGLKK KASELSTLCS VDTCLMVYGE GEVQATEVWP  60
SVQEATRVLE RFKAMPQLDK YKKTMDLDGF IKERTDKLQE KLHKVRRDAD ESETKILIVE  120
AFYSRCAGLE DLTIEQLTSL GWMANAQLKI VNNHFQKFHE QGLLPESASL SGMNVPPYTI  180
AGYLAVEEAQ MQREGWLMNI ARGIGSLGYN GFEGSSGSAT AEPNGDMVQH LNKGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-25M-type_MADS family protein