PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G17500.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 400aa    MW: 41856.8 Da    PI: 9.3515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G17500.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13330375655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  ONIVA08G17500.1 330 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 375
                      689*********************7....467*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    
MYGAPVSKDL SLQPAGVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFVLPG GGGGGGQLQL  60
QQQRPGSPDH AADTVLARFL AGHGGHDNKP PRPAAHFAPP EDSMASHQQQ LMYQSHQQQQ  120
QMASAMEGLY RTVSSGGTES TAAAAGNSLL RQSSSPAGFL NHLTMDNGYG RNMLRAGMGG  180
GGGGGDPRLK GQLSFSSRQG SVMSQISEMG SEDEELAGGG GSPEAGSNGG GAARGGYGGG  240
YAMGSSAWEE PSPPATSLLP DSSLPSKRPR DDLPRQLSLP AASKSSSKPP SSASAAASPE  300
MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERIRKLQEL VPNMEKQTNT  360
ADMLDLAVDY IKELQKQVKV LNDSRSSCTC SASKQKHFAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-39bHLH family protein