PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G17820.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 418aa MW: 45370.6 Da PI: 5.3283

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G17820.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36	1.7e-11	57	113	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g+ ONIVA08G17820.1 57 AFRGVTRHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAARAYDLAALKYWGH 113 58****************77779888877777999999************997 PP
2	AP2	48.1	2.9e-15	155	206	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I + g +k+ +lg++ t eeAa a++ a+ + +g ONIVA08G17820.1 155 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 206 89**99******99966...3.6********************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MAKRRSNGET AAASSDDSSS GVCGGGGGGS GEVEPRRRQK RPRRSAPRDC PSQRSSAFRG 60 VTRHRWTGRF EAHLWDKNTW NESQSKKGRQ GAYDGEEAAA RAYDLAALKY WGHDTVLNFP 120 LSTYDEELKE MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGKWE ARIGRVFGNK 180 YLYLGTYATQ EEAAVAYDIA AIEHRGLNAV TNFDINLYIR WYHGSCRSSS AAAATTIEDD 240 DFAEAIAAAL QGVDEQPSSS PATTRQLQTA DDDDDDLVAQ LPPQLRPLAR AASTSPIGLL 300 LRSPKFKEII EQAAAAAASS SGSSSSSSTD SPSSSSSSSL SPSPLPSPPP QQQPTVPKDD 360 QYNVDMSSVA AARCSFPDDV QTYFGLDDDG FGYPEVDTFL FGDLGAYAAP MFQFELDV

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MAKRRSNGET AAASSDDSSS GVCGGGGGGS GEVEPRRRQK RPRRSAPRDC PSQRSSAFRG  60
VTRHRWTGRF EAHLWDKNTW NESQSKKGRQ GAYDGEEAAA RAYDLAALKY WGHDTVLNFP  120
LSTYDEELKE MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGKWE ARIGRVFGNK  180
YLYLGTYATQ EEAAVAYDIA AIEHRGLNAV TNFDINLYIR WYHGSCRSSS AAAATTIEDD  240
DFAEAIAAAL QGVDEQPSSS PATTRQLQTA DDDDDDLVAQ LPPQLRPLAR AASTSPIGLL  300
LRSPKFKEII EQAAAAAASS SGSSSSSSTD SPSSSSSSSL SPSPLPSPPP QQQPTVPKDD  360
QYNVDMSSVA AARCSFPDDV QTYFGLDDDG FGYPEVDTFL FGDLGAYAAP MFQFELDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	4e-89	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G17820.1