PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G19790.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 246aa    MW: 26290.5 Da    PI: 8.2744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G19790.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08166206954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  ONIVA08G19790.1 166 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 206
                      699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MEFDMLNSNP EAQLELMNTM LQLEQLSAFP DHHGMVVPCS PTSPCMGAQG GHHHFSSVNH  60
QPAHGVVSSG GANTGDGYRD QYYTQLLPAA AYSNAAGGGR GSEYHTTTTT RPASGGGGDG  120
GVGPAAMREM IFHIAALQPV NIDPETVRPP KRRNVRISTD PQSVAARMRR ERISERIRIL  180
QRLVPGGTKM DTASMLDEAI HYVKFLKTQV QSLERAAAAN GHRPPPPTAT SAAAATVAYP  240
GLNGQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RPPKRR
2167172RMRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.13e-41bHLH family protein