PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G20180.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 223aa    MW: 23944.9 Da    PI: 7.7998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G20180.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-132167354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  ONIVA08G20180.1 21 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 67
                     58*************************9.....7***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MVTDGECSAA AARKGGSPAV RSHSEAERKR RQRINAHLAT LRTLVPSASR MDKAALLGEV  60
VRHVRELRCR ADDATEGADV VVPGEGDEVG VEDEDDDEGE RDEGCYVVGG GDRRWRRRVR  120
AWVCCADRPG LMSDLGRAVR SVSARPVRAE VATVGGRTRS VLELDVVVAS DAADNDRAVA  180
LSALRAALRT VLLNREELLA AAAAAATDGY KRPRFSPRCS SLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732ERKRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-14bHLH family protein