PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G20580.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 363aa MW: 38083.6 Da PI: 6.2897

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G20580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	9.9e-14	138	188	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++Y+k++ ONIVA08G20580.1 138 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 188 79**************************...9***************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGVMELV VDDGVVNAFW 60 DGGGGGPSSS PVMAAVPGFI EEPDGGNSSV ADAAPPPEHG GASVVGRDGS AAAPAAAAGR 120 RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMPASYVQ RGDQASIIGG 180 AINYVKEMEQ LLQSLEAHRH ARRARTDAAA ALPFAGFFTF PQYSMSAVPT TTTTTVAAAA 240 TENGNAVAGA GAGDDADADV SGSKPSSVAD IEVTMVESHA NLKVLSRRRP RQLLRMVAGL 300 QHHRLAVLHL NVASAGHMAL YSLSLKVEED CQLTSVDDIA AAVHGIVETI EQEQQQQQKQ 360 SCS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGVMELV VDDGVVNAFW  60
DGGGGGPSSS PVMAAVPGFI EEPDGGNSSV ADAAPPPEHG GASVVGRDGS AAAPAAAAGR  120
RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMPASYVQ RGDQASIIGG  180
AINYVKEMEQ LLQSLEAHRH ARRARTDAAA ALPFAGFFTF PQYSMSAVPT TTTTTVAAAA  240
TENGNAVAGA GAGDDADADV SGSKPSSVAD IEVTMVESHA NLKVLSRRRP RQLLRMVAGL  300
QHHRLAVLHL NVASAGHMAL YSLSLKVEED CQLTSVDDIA AAVHGIVETI EQEQQQQQKQ  360
SCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	125	RKRRR
2	139	150	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-66	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G20580.1