PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G23410.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 198aa    MW: 21875.7 Da    PI: 5.2568
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G23410.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.68.8e-38451441100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp  er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el
  ONIVA08G23410.1  45 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 138
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  ONIVA08G23410.1 139 ARTQAH 144
                      *99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MIDSAVSSPN PAKIFGDPAP KISRTMQDPE EDDDDQQQQH PAARRCAACR YLRRRCADDC  60
VLAPFFPASR PHRYACVHRV FGASNVARLL QSLPMAERGN AANTMAMEAY WRVQDPVYGC  120
TGIINRLQEE IRAVQCELAR TQAHLAIAVA SSQQPPPPPP PPPLPSPPPP QQQQQQQEEQ  180
SPPPLLDPAD EFLNLDGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.18e-32LBD family protein