PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G24560.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MIKC_MADS

Protein Properties

Length: 241aa MW: 27916.1 Da PI: 10.1359

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G24560.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.9	1e-31	33	83	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s ONIVA08G24560.2 33 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 83 79***********************************************96 PP
2	K-box	15.4	7.8e-07	108	138	8	38
K-box 8 sleeakaeslqqelakLkkeienLqreqRhl 38 + e+++ + +++e+ kLk+++enLqr+qR+ ONIVA08G24560.2 108 NRESEQLKASRNEYLKLKARVENLQRTQRQT 138 467888999********************96 PP
3	K-box	20.7	1.8e-08	135	168	67	100
K-box 67 skKnellleqieelqkkekelqeenkaLrkklee 100 ++++++l++q+ elq+ke++++e+n++Lr+klee ONIVA08G24560.2 135 QRQTKHLVDQLTELQRKEQMVSEANRCLRRKLEE 168 589****************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MAEKKKKKKK PQSLLVLTNW RSIGMGRGRV ELKRIENKIN RQVTFAKRRN GLLKKAYELS 60 VLCDAEVALI IFSNRGKLYE FCSTQSMTKT LEKYQKCSYA GPETAVQNRE SEQLKASRNE 120 YLKLKARVEN LQRTQRQTKH LVDQLTELQR KEQMVSEANR CLRRKLEESN HVRGQQVWEQ 180 GCNLIGYERQ PEVQQPLHGG NGFFHPLDAA GEPTLQIGYP AEHHEAMNSA CMNTYMPPWL 240 P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	11	EKKKKKKKP
2	4	10	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	9e-69	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G24560.2