PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G24570.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 177aa    MW: 20092.1 Da    PI: 10.4238
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G24570.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.8e-271766251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  ONIVA08G24570.1 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66
                     8***********************************************86 PP
2K-box17.12.3e-071211644285
            K-box  42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      ++++L++ eL+ Le+++ ++l+ +++k +  + + + ++ kk k
  ONIVA08G24570.1 121 NVNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEKKRK 164
                      5799********************99988777777777766665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR  60
LYEFASSTSS IDTIFGRYWD LLDTTIDLNI EARESRLRQK ERSDDPVPKI NHITQCVLES  120
NVNELNIAEL RGLEEAMTNA LTVVKNKLMM KVASVLPQSE KKRKSCSISE PRSGVSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613RRRKRGKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-27MIKC_MADS family protein