PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G00820.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20151.1 Da    PI: 4.8394
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G00820.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.41.6e-12849344
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      e++  r+v fskRr+ ++K A+ELSv  +a+va ++fs+ g
  ONIVA09G00820.1  8 MESEEARKVCFSKRRADLFKMASELSVHFNADVAAVVFSPAG 49
                     689999**********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MVASRRKMES EEARKVCFSK RRADLFKMAS ELSVHFNADV AAVVFSPAGN RAYSIGDPSV  60
MDRFLSSLPA PAPPAETEPE PEVDWSVMEE LSRQCGQLQA MVDAHKARLE KAEEKLRESG  120
AAAWMMDLEA EVGRMAPEDV LALVTKLAVL RDGVAERAHE MLREALLAVA APTPTTTTTP  180
PPAGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-14M-type_MADS family protein