PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G04180.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 235aa    MW: 26271.8 Da    PI: 7.6045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G04180.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17114161354
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      y+G+r+++ +grW++eIrdp+    +  r++lg+f+tae+Aa+a++   ++++
  ONIVA09G04180.1 114 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 161
                      9*******.**********75....44*******************8777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MRRRVSSSPS SSSSSSPARH HKARRSRRKL VADEDWEAAF REFLSRDDDD DDDDDDGHHV  60
VVAPLIRSSN KCVHGHEVVA STVGGGASGG RRRADDDDGE RRRRRRRERR SYPYRGIRQR  120
PWGRWASEIR DPVKGIRVWL GTFDTAEGAA RAYDDEVRRI YGGNAKTNFP PSPPPPEQPA  180
APVAAERSPS TTTTTTPSAE DSGDSRILIE CCSDDLMDSL LAAFDMTTGD MRFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191107RRRADDDDGERRRRRRR
2100108ERRRRRRRE
3101106RRRRRR
4101107RRRRRRR
5101108RRRRRRRE
6101109RRRRRRRER
7102107RRRRRR
8102109RRRRRRER
9102110RRRRRRERR
10102110RRRRRRRER
11103110RRRRRERR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.17e-26ERF family protein