PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G09540.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 260aa    MW: 28192.1 Da    PI: 7.3029
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G09540.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.63.1e-3678158383
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 
                       ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l+ ++sss++++  +++ ssa+
  ONIVA09G09540.1  78 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAADPSSSSHRAAGDTRMSSAE 158
                      689************************************************************888886663333333333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MQQQQLDQQQ QQQQQHQYDH FFSGHGQFNS ETLEAVLCRP PRGAAADPAV PAAAAAAAVL  60
TAARNGGGGH GRARKRPFRT DRHSKIRTAQ GVRDRRMRLS LDVARDFFAL QDRLGFDKAS  120
KTVDWLLTQS KPAIDRLAAD PSSSSHRAAG DTRMSSAERG GDHHMVAVGA AGSGKGDADK  180
ARGPRGGRSA PMELGCELGR LVPAPVLGEY YYELAEMMSN NTGGEGDDDG DYDDDGDFLD  240
DSGFLCHYRS KKKFSIKDIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.28e-28TCP family protein