PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G10420.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 379aa MW: 41023.5 Da PI: 8.8267

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G10420.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.1	7.9e-17	46	105	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g ONIVA09G10420.1 46 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 105 78*****************888866656446***********************98 PP
2	AP2	52.1	1.6e-16	148	199	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g ONIVA09G10420.1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 199 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MAKPRKNSTT TNTSSSGVAA AAAAAAVKPK RTRKSVPRES PSQRSSVYRG VTRHRWTGRF 60 EAHLWDKNSW NESQNKKGKQ VYLGAYDDEE AAARAYDLAA LKYWGPDTIL NFPLSAYEGE 120 LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY 180 ATQEEAAMAY DMAAIEYRGL NAVTNFDLSR YIKWLRPGAD GAGAAQNPHP MLGALSAQDL 240 PAIDLDAMAS SFQHDGHGAA AAAAQLIPAR HSLGHTPTTS ALSLLLQSPK FKEMIERTSA 300 AETTTTSSTT TSSSSPSPPQ ATKDDGASPQ CSFPKDIQTY FGCAAEDGAA GAGYADVDGL 360 FFGDLTAYAS PAFHFELDL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MAKPRKNSTT TNTSSSGVAA AAAAAAVKPK RTRKSVPRES PSQRSSVYRG VTRHRWTGRF  60
EAHLWDKNSW NESQNKKGKQ VYLGAYDDEE AAARAYDLAA LKYWGPDTIL NFPLSAYEGE  120
LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAAMAY DMAAIEYRGL NAVTNFDLSR YIKWLRPGAD GAGAAQNPHP MLGALSAQDL  240
PAIDLDAMAS SFQHDGHGAA AAAAQLIPAR HSLGHTPTTS ALSLLLQSPK FKEMIERTSA  300
AETTTTSSTT TSSSSPSPPQ ATKDDGASPQ CSFPKDIQTY FGCAAEDGAA GAGYADVDGL  360
FFGDLTAYAS PAFHFELDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-100	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G10420.1