PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G08290.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 665aa MW: 77070.8 Da PI: 8.8142

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G08290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1.1e-08	646	663	9	26
GGGTS--TTTTT-SS-SS CS zf-CCCH 9 fartGtCkyGdrCkFaHg 26 +++ G+C+yG++CkF+H+ ONIVA10G08290.1 646 YQQQGWCPYGENCKFMHD 663 8999*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence
MAAPAADDDD HRAALPREED DGEEEEGSEE EVESDDEEEE EGEGYDWSEE DDPEAASLAG 60 ICDPDAGSDD DPTFDPAADG DLEVDAVLRS RMARMSLSSA RKDRKGSRMP KMGKEEMDLL 120 AMVDKLMHDG QLEKLKVYEC KAYLRMHKLR LSGNKEVLLT RIREQIEKKG APRGVKGHLC 180 GQRTNAGRII KESYGTKKQQ HTFTIEILWS RGYKPWPPLH PLLIKGRNLY KDKTMRQPWL 240 DEEERNRALQ EKHARGYVAR KTREVRIKDK ENERMRRLNR NKENKSKGQD NMNKKSSQAV 300 FPQHTVTTNT VQKRAEKIIP SLQHGESGNS SQQHLSSKQT PTEQFLHYLP PFPHPQQHNE 360 VLLQKGTSRT STTQLINHQA PSLQHAVKVE TTQQQQQQQP PKSIKPAPIQ QSSAYPQQYP 420 KHQHHNQALP RVPPSQEQRA AVSQTSAARQ DFTNHQAPPS RQHGGSENMR RQEISSRPIP 480 TPTPQQAVSY TQQQPPNHQY RNEAFWQQGG TSTSRTGFMD RQSNNWGSTD HDKPAFQPFT 540 QKAKTYQHGS NGSGHHQARV DRETHQPLRS RNKDYHWEDQ SYHHQQNHHQ NYYGHRQMSQ 600 DQYHHQQNHH QNYHGRQGIN GNQYHDRQNH NQNPQRFRPW KPCFIYQQQG WCPYGENCKF 660 MHDLR

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence

MAAPAADDDD HRAALPREED DGEEEEGSEE EVESDDEEEE EGEGYDWSEE DDPEAASLAG  60
ICDPDAGSDD DPTFDPAADG DLEVDAVLRS RMARMSLSSA RKDRKGSRMP KMGKEEMDLL  120
AMVDKLMHDG QLEKLKVYEC KAYLRMHKLR LSGNKEVLLT RIREQIEKKG APRGVKGHLC  180
GQRTNAGRII KESYGTKKQQ HTFTIEILWS RGYKPWPPLH PLLIKGRNLY KDKTMRQPWL  240
DEEERNRALQ EKHARGYVAR KTREVRIKDK ENERMRRLNR NKENKSKGQD NMNKKSSQAV  300
FPQHTVTTNT VQKRAEKIIP SLQHGESGNS SQQHLSSKQT PTEQFLHYLP PFPHPQQHNE  360
VLLQKGTSRT STTQLINHQA PSLQHAVKVE TTQQQQQQQP PKSIKPAPIQ QSSAYPQQYP  420
KHQHHNQALP RVPPSQEQRA AVSQTSAARQ DFTNHQAPPS RQHGGSENMR RQEISSRPIP  480
TPTPQQAVSY TQQQPPNHQY RNEAFWQQGG TSTSRTGFMD RQSNNWGSTD HDKPAFQPFT  540
QKAKTYQHGS NGSGHHQARV DRETHQPLRS RNKDYHWEDQ SYHHQQNHHQ NYYGHRQMSQ  600
DQYHHQQNHH QNYHGRQGIN GNQYHDRQNH NQNPQRFRPW KPCFIYQQQG WCPYGENCKF  660
MHDLR

Link Out ? help Back to Top
Ensembl	ONIVA10G08290.1