PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G12560.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 528aa MW: 58743.4 Da PI: 9.9681

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G12560.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.2	5.2e-08	50	82	59	89
FAR1 59 rtgCkaklkvkkek..dgkwevtkleleHnHel 89 + C+a+++v k++ gkw+v+kl+ eHnHe+ ONIVA10G12560.1 50 EERCRAMMEVVKKDavGGKWRVSKLVVEHNHEV 82 568***99888889*************97 PP
2	FAR1	28.1	6.5e-09	114	172	2	48
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............t 48 fY Y+++vGF+ r+ ++++s ng +++++f Cs+ ++++++k+ + ONIVA10G12560.1 114 FYYGYGERVGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKAngldelkeeevqD 172 9***********************************99999998886766665444440 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MADHAAASAA ADADPSLRQG GDAADADEEE EEEEAAPSSA AGVGVGVGVE ERCRAMMEVV 60 KKDAVGGKWR VSKLVVEHNH EVEVAPCGEG EGEVAAAVPV MGMEFESVHA AKGFYYGYGE 120 RVGFKARTGS NRRSVGNGVM IMQRFLCSRG NYANRRNKAN GLDELKEEEV QDGAAGKRKR 180 GANNKRNPNP VKNNSEVIEV ESSAEKGVGT AVPNNGQEAR KMRGSKRGRT KKDVTEKDEK 240 PVVELEAEKE DEVVAQDGDD VEEQKGEREE EMEEEVQVEV QEKRGRGRPR KADAEGNALQ 300 ARVLRELGLR ASQYTNEERK KIVSKYLSKR QSRPVSARPA KIASRQALAE RRKRGDGGRF 360 LSSEGLTQPS ERRSKRLEKQ NLKKEDKVYR ILRRLKFRLG HRILHSNSDL ALFRDFLAYH 420 HLGRNQHLLL SSNLIYSNHP FIAVHKSPRP HLRTSSHCSF LAAILNWVTK PRIKASTPFQ 480 SGISCDLTKY GKGFLIKVQL PLIAIAFFLK LTSTFRANIL WPVVVQYV

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MADHAAASAA ADADPSLRQG GDAADADEEE EEEEAAPSSA AGVGVGVGVE ERCRAMMEVV  60
KKDAVGGKWR VSKLVVEHNH EVEVAPCGEG EGEVAAAVPV MGMEFESVHA AKGFYYGYGE  120
RVGFKARTGS NRRSVGNGVM IMQRFLCSRG NYANRRNKAN GLDELKEEEV QDGAAGKRKR  180
GANNKRNPNP VKNNSEVIEV ESSAEKGVGT AVPNNGQEAR KMRGSKRGRT KKDVTEKDEK  240
PVVELEAEKE DEVVAQDGDD VEEQKGEREE EMEEEVQVEV QEKRGRGRPR KADAEGNALQ  300
ARVLRELGLR ASQYTNEERK KIVSKYLSKR QSRPVSARPA KIASRQALAE RRKRGDGGRF  360
LSSEGLTQPS ERRSKRLEKQ NLKKEDKVYR ILRRLKFRLG HRILHSNSDL ALFRDFLAYH  420
HLGRNQHLLL SSNLIYSNHP FIAVHKSPRP HLRTSSHCSF LAAILNWVTK PRIKASTPFQ  480
SGISCDLTKY GKGFLIKVQL PLIAIAFFLK LTSTFRANIL WPVVVQYV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	291	KRGRGRPRK
2	351	387	RRKRGDGGRFLSSEGLTQPSERRSKRLEKQNLKKEDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-09	FAR1 family protein

Link Out ? help Back to Top
Ensembl	ONIVA10G12560.1