PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G20730.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 427aa MW: 44594.9 Da PI: 5.4093

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G20730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.2e-12	247	286	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RRdriN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq ONIVA10G20730.1 247 KRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 286 7****************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MNQCVPSWDL DDPVGGGGIG GGGGGGHRVV SGGGGGFMPV AVPTSDQYNE VAELTWEKGN 60 ISSHGLLLNR PAPPKFPPHQ QLQAAMGGGG GGGVVGDRET LEAVVGEAAA RSSSSSHLAA 120 RARPVPAPWL GSVGVVAAAD ALVPCDADAA EGRSKRPREV VGEDGRRACA SQGSAAPGRR 180 GESTLLTLDA CCGTAADDVC GFTTTTNNST SLEDRTEDKG SPETENTSIA GGASDSRGMC 240 DEDEHVKRRD RINQKMKTLQ KLVPNSSKTD KASMLDEVID YLKQLQAQVQ VMSRMGSMMM 300 PMGMAMPQLQ MSVMAQMAQM AQIGLSMMNM GQAGGYAPMH MHTPPFLPVS WDAAASSSSA 360 AAAADRPPQP TGAATSDAFS AFLASQAAQQ NTQQPNGMEA YNRMMAMYQK LNHQQQQQQD 420 QPSNSRQ

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MNQCVPSWDL DDPVGGGGIG GGGGGGHRVV SGGGGGFMPV AVPTSDQYNE VAELTWEKGN  60
ISSHGLLLNR PAPPKFPPHQ QLQAAMGGGG GGGVVGDRET LEAVVGEAAA RSSSSSHLAA  120
RARPVPAPWL GSVGVVAAAD ALVPCDADAA EGRSKRPREV VGEDGRRACA SQGSAAPGRR  180
GESTLLTLDA CCGTAADDVC GFTTTTNNST SLEDRTEDKG SPETENTSIA GGASDSRGMC  240
DEDEHVKRRD RINQKMKTLQ KLVPNSSKTD KASMLDEVID YLKQLQAQVQ VMSRMGSMMM  300
PMGMAMPQLQ MSVMAQMAQM AQIGLSMMNM GQAGGYAPMH MHTPPFLPVS WDAAASSSSA  360
AAAADRPPQP TGAATSDAFS AFLASQAAQQ NTQQPNGMEA YNRMMAMYQK LNHQQQQQQD  420
QPSNSRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-25	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA10G20730.1