PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G20730.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 203aa    MW: 22453.8 Da    PI: 9.021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G20730.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-1223621155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  ONIVA10G20730.2 23 KRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 62
                     7******************8.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MCDEDEHVVI RGEGAMRSVI YIKRRDRINQ KMKTLQKLVP NSSKTDKASM LDEVIDYLKQ  60
LQAQVQVMSR MGSMMMPMGM AMPQLQMSVM AQMAQMAQIG LSMMNMGQAG GYAPMHMHTP  120
PFLPVSWDAA ASSSSAAAAA DRPPQPTGAA TSDAFSAFLA SQAAQQNTQQ PNGMEAYNRM  180
MAMYQKLNHQ QQQQQDQPSN SRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-19bHLH family protein