PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G20730.3
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 189aa    MW: 20907.9 Da    PI: 8.4732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G20730.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.9e-129481155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  ONIVA10G20730.3  9 KRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 48
                     7******************8.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MCDEDEHVKR RDRINQKMKT LQKLVPNSSK TDKASMLDEV IDYLKQLQAQ VQVMSRMGSM  60
MMPMGMAMPQ LQMSVMAQMA QMAQIGLSMM NMGQAGGYAP MHMHTPPFLP VSWDAAASSS  120
SAAAAADRPP QPTGAATSDA FSAFLASQAA QQNTQQPNGM EAYNRMMAMY QKLNHQQQQQ  180
QDQPSNSRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-19bHLH family protein